Ok I tested it again this morning and it was working as intended, but then it went bad again after a reload. It seems to be doing it randomly, because I can't really find a pattern or a reason.
edit: found something, I think.
Open FBA->Load TMNT->Good Screen->Exit Game->Load TMNT->Bad Screen
Open FBA->Load TMNT->Good Screen->Exit Game->Load TMNT->Bad Screen
(scratch that, it's completely random on my end)